CDS
| Accession Number | TCMCG078C12740 |
| gbkey | CDS |
| Protein Id | KAG0470611.1 |
| Location | join(30832688..30832699,30832786..30832902,30833141..30833199,30833318..30833365,30833458..30833511,30833599..30833647,30833747..30833794,30840750..30840815,30842493..30842543,30842620..30842739,30842805..30842889,30850950..30851031,30851929..30852034,30852284..30852327,30852408..30852462,30861751..30861834,30863385..30863423) |
| Organism | Vanilla planifolia |
| locus_tag | HPP92_017311 |
Protein
| Length | 372aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA633886, BioSample:SAMN14973820 |
| db_source | JADCNL010000008.1 |
| Definition | hypothetical protein HPP92_017311 [Vanilla planifolia] |
| Locus_tag | HPP92_017311 |
EGGNOG-MAPPER Annotation
| COG_category | L |
| Description | Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double- stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko00001 [VIEW IN KEGG] ko01000 [VIEW IN KEGG] ko03032 [VIEW IN KEGG] ko03400 [VIEW IN KEGG] ko04147 [VIEW IN KEGG] |
| KEGG_ko |
ko:K04799
[VIEW IN KEGG] |
| EC | - |
| KEGG_Pathway |
ko03030
[VIEW IN KEGG] ko03410 [VIEW IN KEGG] ko03450 [VIEW IN KEGG] map03030 [VIEW IN KEGG] map03410 [VIEW IN KEGG] map03450 [VIEW IN KEGG] |
| GOs | - |
Sequence
| CDS: ATGGGCATTAAGGGCTTAGGCAAACTATTGTCAGACAAAGCCCCGAAGGCCATGAAAGAGGAGACCTTGGGGAGCTACGTTGGCCAAAAGATAGCCATCGACGCCAGTATGAGCATTTACCAGTTCCTGATTTCTGTGGGGAGAGTTGGGACAAGAACACTCACAAATGAAGCTGGAGAAGTAACCAGGATGTTCACTCGGACGATAAGGTTACTAGATGCTGGAATAAAGCCAGTGTATGTTTTTGATGGGCTGCCACCTGATCTGAAGAGGCAGGAGCTTGATAAAAGGTGCTTTAACAGGGAGAATGCAGTCAAGAATCTAGCCATAGCATTAGAGACAGGAAATAGCCATGACATAGAAAAGTTTAGCAAGAGAATTGTGAAGGTTACTTTGCAACATAACGAGGGGTGTAAGAAACTCCTGAAATTGATGGGCGTGACTGTGGTTGAGGCTCCTAGTGAAGCAGAAGCTCAATGTGCAGCACTTTGCAAAAGTGGTGAGGTTTATGCTGTGGCTTCGGAAGATATGGATTCACTAACTTTTGGAGCTACAAGGTTCCTTCGCCATCTGATGGATAATGTCTCTGGAAAAGCCCCTATTGTAGAATTTGAAATATCAAAGGTTTTAGGGGAGCTAGATCTCACTATGGCTCAATTTGTTGACTTATGCATTCTTTCTGGGTGTGATTACTGTGATGGTATAAAAGGTATTGGAGCACGGACGGCATTTAAGCTTATCCAAAGGCATGGTTCAATAGAAGGAATATTGGAGAATATAAACAGAGAAAGGTATCGTGTACCCGAGGGTTGGCCATACCAGGATGTACGCCATCTTTTCCAGGAGCCGTTGGTGCTTGTGAAAATTCCGGAGCATGGGTGTTCTCCTGACGAAGAGGCAGTAAAGAGGATTAAGGAAGCTAATAGTAAATATTGTGGGAGACTGGAGTCCTTTTATAATTCAGAGAACTGTGCGTCTAAACCACGTACAAAAAAGGAAAGACGCATCCTTAGTGCTCCAAGTACAGCAACAATTTCAAACATTTTTTCTCAACAGTTTAGAAAGTGCTCGAGGGACAAGGTATTTGTTTCTCTGAAGTCTTTGTCTTATGTTGCTTAG |
| Protein: MGIKGLGKLLSDKAPKAMKEETLGSYVGQKIAIDASMSIYQFLISVGRVGTRTLTNEAGEVTRMFTRTIRLLDAGIKPVYVFDGLPPDLKRQELDKRCFNRENAVKNLAIALETGNSHDIEKFSKRIVKVTLQHNEGCKKLLKLMGVTVVEAPSEAEAQCAALCKSGEVYAVASEDMDSLTFGATRFLRHLMDNVSGKAPIVEFEISKVLGELDLTMAQFVDLCILSGCDYCDGIKGIGARTAFKLIQRHGSIEGILENINRERYRVPEGWPYQDVRHLFQEPLVLVKIPEHGCSPDEEAVKRIKEANSKYCGRLESFYNSENCASKPRTKKERRILSAPSTATISNIFSQQFRKCSRDKVFVSLKSLSYVA |